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NNRTI Resistance: An Update From the XI International HIV Drug Resistance Workshop

Written by Brian Conway, M.D.
Published on HIVresistanceWeb: August 16, 2002

Another year, another Workshop on HIV Drug Resistance. We have become accustomed to seeing large amounts of new information at this meeting, at least some of which has a major and immediate impact in our approach to patient care.

Well, for 2002, we might be a bit disappointed, at least as far as NNRTIs are concerned. Resistance to this class of agent is perhaps the best understood of all. In one interesting protocol, the GUESS study, a group of 12 experts were presented with as series of 45 complex viral genotypes, selected based on the availability of phenotypic resistance test results for all antiretroviral agents and showing a 4-fold increase in IC50 for at least one drug [1]. For the NNRTIs, the experts predicted the phenotype (based on genotypic information alone) with great precision - 66% to 69% for the three NNRTIs. Clearly, new "blood" is needed in this class.

Elegant crystallographic studies have demonstrated that, at least for nevirapine, mutations at codons 100, 106 and 108 give rise to significant perturbations in the necessary interaction of the drug with the aromatic side chains at codons 181 and 188 [2]. This explains why mutations at any one of these sites leads to a significant reduction in susceptibility to nevirapine. These findings indicate the need for new agents, the activity of which is less dependent on the interactions with the aromatic side chains, thereby reducing the number of pathways to resistance. TMC125 may be such a drug [3]. In vitro, the only way to select isolates that were highly resistant to TMC125 was to incubate an isolate that already carried the K103N and Y181C mutations in the presence of at least 200 nM TMC125. The addition of L100I and other polymorphisms (the significance of which remains unclear) conferred high-grade resistance. Clinical trials are eagerly awaited to see if these observations will be associated with a clinical benefit in vivo.

Although it has been known that the G190E mutation confers resistance to NNRTIs, it is rarely seen in vivo. This is likely due to its impact on replicative capacity. Such reduced fitness is also associated with other mutations, such as V106A, P225H, M230L and P236L [4]. This may be why these changes are less frequently seen in vivo. Now, a patient has been described who was treated with an efavirenz-containing combination [5]. A compensatory change occurred as an insertion of an arginine residue between codons 100 and 105 leading to a virus that was quite viable and highly resistant to delavirdine, efavirenz and nevirapine. It would be interesting to see how such an isolate fared against TMC125, and whether the insertion would restore the fitness of other mutants.

Primary NNRTI resistance is alive and well. First, it appears that the best tool to assess such resistance is genotypic (rather than phenotypic) testing. In one interesting study of 25 isolates with NNRTI resistance mutations, only 20 were identified as resistant by phenotypic testing [6]. In a large, North American study of 509 patients identified during the first months of infection between 1995 and the present time, the incidence of NNRTI resistance was quite stable over time, at 6.6% to 7.3%, while primary resistance to NRTIs and PIs is now <1% [7]. This may relate to the fact that genotypic changes at codons 103, 181 and 188 (accounting for the majority of cases of NNRTI resistance) are not associated with decreased replicative capacity, a finding that contrasts with the mutations that account for most of the primary resistance to drugs in other classes [8]. This is supported by the findings of a San Francisco-based study of recently infected individuals [9]. In this cohort, 8% of isolates carried primary NNRTI resistance, 63% of which was accounted for by the K103N mutation [10]. Although some of these isolates were less "fit", most were not and their carriage was not associated with a lower plasma viral load at set point, although CD4 cell counts may have been slightly higher [11].

Primary NNRTI resistance has also been measured in a number of other observational studies. Thankfully, little or no resistance has been identified in the Ivory Coast and Viet Nam, nor in 37 pregnant women studied in South Africa [12,13]. Results of other studies are summarized in the table below, showing significant variability from one country to the other, but with prevalence approaching 10% in some areas [14-20].

Abstract Country N Acute/chronic infection NNRTIR (%)
166 France 251 Acute 4
183 Switzerland 200 Acute 0.5
167 Belgium 93 Chronic 7.5
162 Tunisia 28 Chronic 7
161 USA 281 Chronic 5.3
169 Canada 635 Chronic 0.3
177 Denmark 98 Chronic 0

Let us finish on a positive note. At the Intentional AIDS Conference, Haubrich et al presented an interesting study of NNRTI hypersusceptibility (NNRTIHS) and its significance [21]. Patients with significant prior exposure to NRTIs (but naive to NNRTIs) began a new regimen that was to include NNRTIs. NNRTIHS was defined as a fold-change in IC50 of < 0.4 in the patient sample compared with a reference wild-type control sample. Of 177 patients, NNRTIHS was detected in 24% for efavirenz, 17.5% for delavirdine, and 20% for nevirapine. The phenomenon was associated with decreased NRTI susceptibility, particularly to zidovudine and abacavir. The mean decrease in HIV-1 RNA six months after starting a new NNRTI-containing regimen was greater for the 21 patients with NNRTIHS compared with the 77 patients without NNRTIHS (1.2 vs. 0.8 log10 copies/mL, P =0.016). If NNRTIs are not used as part if the initial treatment regimen, they may have particular benefit following virologic breakthrough, especially if broad NRTI resistance is present.

In summary, much of the new information about NNRTI resistance presented over the past weeks reminds us of the need for new drugs in this class. Such agents appear to be in development and ready to enter clinical trials. Enhanced knowledge about the mechanisms of NNRTI resistance and the interesting phenomenon of hypersusceptibility may better inform drug development and move us closer to the goal of sequencing NNRTIs, opening new treatment options for our patients living with HIV/AIDS.

  1. AR Zolopa, LC Lazzeroni, A Rinehart, D Kuritzkes for the GUESS investigators. Accuracy, precision and consistency of expert HIV-1 genotype interpretation: an international comparison (The GUESS study). Antiviral Ther 2002; 7:S97.
  2. DK Stammers, J Ren, CE Nichols, PP Chamberlain, KL Weaver, SA Short, DI Stuart. Crystal structures of HIV-1 reverse transcriptase mutated at codons 100, 106 and 108 show nevirapine resistance is mediated via perturbation of interactions with Tyr181 or Tyr188. Antiviral Ther 2002; 7:S23.
  3. J Vingerhoets, H Azijn, E Fransen, K Andries, R Pauwels, M-P de Béthune. MC125 can suppress the selection of resistant HIV from a virus population carrying the K103N or the Y181C mutation. Antiviral Ther 2002; 7:S8.
  4. W Huang, T Wrin, A Gamarnik, J Beauchaine, JM Whitcomb, CJ Petropoulos. Reverse transcriptase mutations that confer non-nucloside reverse trancsriptase inhibitor resistance may also impair replication capacity. Antiviral Ther 2002; 7:S60.
  5. N Desire, C Amiel, V Schneider, N Delphin, E Dam, F Clavel, JC Nicolas, W Rozenbaum. An HIV-1 isolate with the mutation G190E and an insertion between codons 100-105 of reverse transcriptase: phenotypic resistance implications. Antiviral Ther 2002; 7:S35.
  6. DE Bennett, I Zaidi, H Weinstock, T Woods, L McCormick, G Garcia-Lerma, W Heneine. Phenotypic resistance testing may underestimate prevalence of HIV strains with drug-selected mutations in newly-diagnosed, drug-naive individuals. Antiviral Ther 2002; 7:S153.
  7. SJ Little, S Holte, JP Routy, E Connick, ES Daar, B Conway, L Wang, M Markowitz, AC Collier, K Dawson, NS Hellmann, and DD Richman. Longitudinal analysis of transmitted drug resistance among recently HIV-infected subjects in North America. Antiviral Ther 2002; 7:S144.
  8. W Huang, T Wrin, A Gamarnik, J Beauchaine, JM Whitcomb, CJ Petropoulos. Reverse transcriptase mutations that confer non-nucloside reverse trancsriptase inhibitor resistance may also impair replication capacity. Antiviral Ther 2002; 7:S60.
  9. RM Grant, JD Barbour, T Wrin, M Warmerdam, NS Hellmann, JO Kahn, CJ Petropoulos and FR Hecht. Transmission of drug resistant HIV-1 exhibiting lower replication capacity is associated with higher CD4 cell counts. Antiviral Ther 2002; 7:S41.
  10. RM Grant, JD Barbour, T Wrin, M Warmerdam, NS Hellmann, JO Kahn, CJ Petropoulos and FR Hecht. Transmission of drug resistant HIV-1 exhibiting lower replication capacity is associated with higher CD4 cell counts. Antiviral Ther 2002; 7:S41.
  11. RM Grant, FM Hecht, M Warmerdam, L Liu, T Liegler, CJ Petropoulos, NS Hellmann, M Chesney, MP Busch, JO Kahn. Time trends in primary HIV-1 drug resistance among recently infected persons. JAMA 2002 Jul 10;288(2):181-8.
  12. HJ Fleury, S Mboup, E Delaporte, Observatory of HIV-1 resistance in developing countries of Africa and Asia (ANRS 1257 project). Antiviral Ther 2002; 7:S139.
  13. L Morris, C Pillay, H Dirr, G Gray, J McIntyre. Reverse transcriptase and protease sequences from drug-naïve pregnant women in South Africa. Antiviral Ther 2002; 7:S145.
  14. ML Chaix, D Descamps, C Deveau, V Schneider, M Harzic, C Tamalet, J Izopet, I Pellegrin, A Ruffault, J Cottalorda, B Masquelier, V Calvez, C Rouzioux, F Brun-Vezinet, D Costagliola, L Meyer ANRS AC11 Resistance Group, Cohort PRIMO, PRIMOFERON and PRIMSTOP Study Groups. Antiretroviral resistance, molecular epidemiology and response to initial therapy among patients with HIV-1 primary infection in 1999-2000 in France. Antiviral Ther 2002; 7:S138.
  15. S Yerly, S Jost, A Telenti, M Flepp, L Kaiser, J-P Chave, P Vernazza, MBattegay, H Furrer, C Michon, P Burgisser, L Perrin and the Swiss HIV Cohort Study (SHCS). Transmission of drug resistance: impact of primary and chronic HIV infection. Antiviral Ther 2002; 7:S150.
  16. I Derdelinckx, K Van Laethem, B Maes, Y Schrooten, S Dewit, E Florence, K Fransen, S García Ribas, D Marissens, M Moutschen, E Van Wijngaerden, D Vaira, G Zissis, M Van Ranst, A-M Vandamme. Drug resistance among therapynaive HIV-infected patients studied by sequencing and VERSANT™ HIV-1 resistance assays (LiPA) has limited impact on treatment response. Antiviral Ther 2002; 7:S139.
  17. M Ben Halima, K Sandres-Saunes, Z Arrouji, A Slim, S Ben Redjeb, J Puel, J Izopet. Antiretroviral drug resistance in developing countries: the Tunisian experience. Antiviral Ther 2002; 7:S135.
  18. MI Becker, R Haubrich, CW Wesselman, L Garrett, SY Lee, D Millard, JD Baxter. HIV-1 genotypic resistance in treatment- naive subjects enrolled in an observational trial (GAIN). Antiviral Ther 2002; 7:S134.
  19. GC Jayaraman, T Gleeson, P Sandstrom, CP Archibald for the Canadian HIV Strain and Drug Resistance Surveillance Program. Prevalence and determinants of HIV-1 drug resistance in Canada (1997-2001). Antiviral Ther 2002; 7:S140.
  20. LB Jørgensen, M Bøgh, J Gerstoft, O Kirk, N Obel, C Pedersen, H Nielsen, C Nielsen. Prevalence of drug resistance mutations and non-B subtypes in newly diagnosed HIV-1 positive patients in Denmark. Antiviral Ther 2002; 7:S146.
  21. R Haubrich, N Hellmann, P Keiser, C Kemper, M Witt, D Forthal, J Leedom, M Leibowitz, D Richman. The clinical relevance of non-nucleoside reverse transcriptase inhibitor (NNRTI) hypersusceptibility: a prospective cohort analysis. XIV International AIDS Conference. 7-12 July 2002, Barcelona, Spain. Abstract ThOrB1388.


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